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BioRender is a web-based graphics software designed to help scientists easily create and share high-quality, publication-ready scientific diagrams and illustrations.

BioRender is a browser-based tool for creating scientific diagrams, graphical abstracts, and biological pathways. It provides a standardized library of pre-drawn, scientifically validated icons spanning fields such as immunology, microbiology, neuroscience, and biochemistry. Users can drag and drop icons onto a canvas, adjust colors, scale elements, and insert text labels to build figures suitable for publications, presentations, and grant proposals. The platform also includes collaboration tools that allow multiple researchers to review and edit diagrams within a shared workspace.

ChimeraX is a powerful visualization program for analyzing molecular structures, density maps, and 3D microscopy data.

UCSF ChimeraX is a molecular visualization program used for analyzing and rendering three-dimensional structures of biological macromolecules, including proteins, nucleic acids, and supramolecular complexes. It processes data from X-ray crystallography, NMR spectroscopy, and cryo-electron microscopy density maps. The software provides tools for molecular docking analysis, surface rendering, measuring distances, and identifying hydrogen bonds. Furthermore, it supports the generation of high-resolution images and animations required for structural biology publications and presentations.

Circos is a software package for visualizing data and information in a circular layout, ideal for comparative genomics.

Circos is a software package for visualizing data and information in a circular layout. It is used widely in genomics to display structural variations, genomic alignments, synteny, and density distributions across chromosomes. The circular configuration enables comparison of relationships across positions on one or more genomes, facilitating the identification of patterns and trends in complex datasets. It uses a configuration-file-based system to control layout parameters, tracks, and data links, producing high-resolution vector and raster outputs for academic publishing.

ACD/Name

Software for generating IUPAC names from the structures of the compounds and vice versa.

ACD/Name generates chemical names of organic, organometallic, inorganic or biochemical compounds according to IUPAC and CAS Index rules using the structure of the molecule as input. It generates names in English, French, German and other european languages as well as InChI and SMILES strings.

ACD/PhysChem und ADME Predictors

Software for the prediction of physicochemical properties and ADME characteristics of chemical compounds.

With the PhysChem and ADME modules of ACD/Percepta you can rapidly predict physicochemical (aqueous solubility, logP, logD, pKa, boiling point, etc.) and ADME (blood brain barrier permeation, passive absorption, P-gp specificity etc.) properties from a chemical structure. You can employ batch modules to screen thousands of compounds and investigate the predictions by using different algorithms. In the spreadsheet view the predicted results can be sorted, filtered and color-coded using custom thresholds to facilitate the analysis.

Adobe Illustrator

Adobe illustrator is a vector graphics application that allows for clean and simple image creation (in 2D).

Adobe Illustrator facilitates the creation of logos, drawings, typography, illustrations and, of course, figures for papers as well as group webpages and other applications. Because illustrator artwork is vector based, it can scale up and down easily for different sized screens and thus is valuable for material published on the web. It is possible to create freehand drawings as well as recolor imported photos (rendering the additional use of Photoshop unnecessary for figures). Furthermore, it is possible to import graphs from other programs, such as excel, and edit the colors, font size, and labels as appropriate for making more visually pleasing figures. When writing a paper, if one of the co-writers wants to match colors from old papers, it is possible to import the old figures, register the color, and then match all future figures for consistency.

Adobe InDesign

Adobe InDesign is page layout software for creating, preflighting, and publishing multi-page documents.

Adobe InDesign facilitates the layout and typesetting of multi-page documents, such as academic journals, books, brochures, posters, and reports. It allows for the precise management of typography, grid structures, and master pages to ensure consistent formatting across extensive documents. The software supports the integration of vector graphics from Adobe Illustrator and raster images from Adobe Photoshop, enabling the compilation of media for print and digital distribution. Furthermore, users can generate interactive PDFs, tables of contents, and cross-references, which assists in the production of complex academic or promotional materials.

Adobe Photoshop

Adobe Photoshop is the leading software for digital image editing, photo retouching, and graphic creation.

Adobe Photoshop is used for editing, processing, and retouching pixel-based images. It can be used to adjust contrast, brightness, and color balance in photographs. The application includes tools for layering, masking, and quantitative image analysis, including the ability to measure pixel intensity or area. Additionally, it supports figure preparation by allowing the cropping, resizing, and alignment of multiple raster elements into composite images.

AlphaFold

AlphaFold is an AI system that predicts 3D protein structures from amino acid sequences with remarkable accuracy.

AlphaFold is an artificial intelligence program developed to predict the three-dimensional structures of proteins based on their amino acid sequences. It utilizes deep learning architectures to compute atomic coordinates with high accuracy, assisting in the understanding of molecular mechanisms, protein-protein interactions, and structural biology. The generated models can be exported in standard formats, such as PDB files, for further visualization and structural analysis in specialized software.

Altmetric

Altmetric is a provider of qualitative data on the online spread and perception of research, providing an alternative to established, citation-based metrics.

Altmetric data can be accessed on a publication's website via a bookmarklet. The aggregated data is displayed as a colored donut with a number. The number is a weighed sum of different outlets and prevalence of a color indicates a dominating medium wherein the publication was mentioned. Altmetric uses policy documents, news, blogs, social media, podcasts, academic networks and other sources. Links to the individual sources are provided upon clicking the donut. With your NETHZ credentials you can access Altmetric Browser to explore and analyze the publications of ETH Zurich.

antiSMASH

antiSMASH is a tool to annotate and analyze biosynthetic gene clusters for the production of secondary metabolites from a given genome sequence.

antiSMASH is a tool that allows the rapid genome-wide identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal and plant genomes. It does so by combining and cross-linking different tools and databases, which are commonly used for in silico analysis of genome sequences and the analysis of secondary metabolites.

The tool not only identifies gene clusters, but also identifies related, homologous gene clusters in other species and if possible for the given class of secondary metabolite gene cluster also predicts the chemical structure of the compound that is produced.

BASE

BASE (Bielefeld Academic Search Engine) is a search engine for scientific texts.

It indexes and searches not only journals, but also many university repositories and thus works such as dissertations.

Bealls' List

Beall's List, a creation of Jeffrey Beall, includes criteria for categorizing predatory journals and lists publishers that meet those criteria.

The original list was removed by its creator, a copy remains accessible, however, it is not updated.

Predatory publishers provide limited publishing services while pretending a much higher standard and reputation than they actually have. When publishing in a journal for the first time, ask yourself:

  • Is the journal or publisher listed in Beall’s List?
  • If claiming to be an open access journal, is the journal in the DOAJ?
  • Is the publisher a member of recognized professional organizations?
  • Is the journal truly indexed?
  • Is the journal transparent and following best practices in editorial and peer review processes, governance, ownership and COPE guidelines?

Information on why Beall's original list disappeared can be found in the web or here.

Bioconductor

Bioconductor is a free, open source and open development software project and focuses primarily on R. The project distributes various packages for specific R applications and genome annotation packages for microarrays.

Bioconductor offers add-on modules as R packages in order to enable the R user to analyze all types of genomic data, including Affymetrix microarrays, SAGE, nucleotide sequences, and SNP data. It is updated twice per year following the released R updates and provides bugfixes and new packages. In addition to R, Bioconductor also contributes to other programming languages.

BIOVIA Discovery Studio Visualizer

Software for 3D visualization and analysis of biomolecules.

DS Visualizer is an application for analysis and 3D visualization of macromolecules (proteins, RNA, DNA). Its particular strength lies in the intuitive usage as a structure analysis tool: There is no need for reading documentations, just start viewing and manipulating PDB structures in one of the best designed UIs for 3D representations. Simply expand the tree view on the left of the 3D molecule view to select chains or residues down to the single atoms. The selection can be done in the 3D view as well. Selected objects are always highlighed in both places. It's the perfect tool for also for beginners and useres who rarely work with 3D software for visualization of macromolecules.

Browzine

Your digital journal stack: App for managing, browsing and reading freshly published articles and journals.

Browzine is a digital bookshelf, in which one can organise, download and read journals avaialbe via ETH library. New articles and issues are automatically flagged, so one does not lose track. Articles can be saved and read offline at a later point in time.

Canva

Canva is a browser-based graphic design platform utilized for creating presentations, posters, social media graphics, and reports.

It operates on a drag-and-drop interface and offers a library of templates, shapes, typography options, and stock media assets. In professional and educational environments, it allows for the structured alignment of visual components and text without requiring advanced design training. The system supports team collaboration through shared links, permitting multiple individuals to edit, comment, and export design assets simultaneously.

CAS Source Index (CASSI)

The CAS Source Index (CASSI) Search Tool is an online resource for retrieving accurate bibliographic information like journal abbreviations and their full titles.

This free resource can be used to quickly and easily look up or confirm past and present publication titles and abbreviations, as well as CODEN, ISBN, or ISSN codes. The CASSI database contains a listing of publications indexed by Chemical Abstracts Service (CAS) since 1907.

ChemDraw

Program for drawing chemical structures and reaction schemes. The web version is called ChemDraw JS.

ChemDraw is a drawing tool for chemists and biologists to create molecules and reactions for use in laboratory reports, studies and publications and for querying chemical databases, now including SciFinder, Reaxys or Google. ChemDraw features biopolymer tools, and conversion from and to various chemical strings such as SMILES and InChI. You can draw and view structures in 2D, or render in 3D. ChemDraw can be licensed through the ETH IT Shop. The Chemistry | Biology | Pharmacy Information Center regularly offers hands-on training sessions.

Chemistry by Design

Flashcard app for practicing the thinking skills used for multistep organic synthesis.

The app guides through synthetic sequences in a stepwise manner, depicting starting material, reagents and product for each step as a flashcard. It features a quiz mode wherein reagents and products are hidden under grey boxes. You can do some guesswork before looking at the solution by simply tapping. At the end of each synthesis there is a direct DOI link to the original paper.

Chemistry Reference Resolver

Copy a citation or a DOI into the field, to get to the chemicle article webiste in one click. Works with up to 10 citations simultaneously.

The Chemistry Reference Resolver takes as input a text reference to a published article in a variety of formats and then finds and displays the corresponding publication by pointing the users to the webpage where the citation is hosted. It can also be used to retrieve patents and safety data sheets or look up a chemical at Aldrich via its CAS number. The search bar add-on is especially fast: Just copy in a reference and get to the article, without having to load the website. Using the Chrome extension, references can be resolved by selecting and right click.

ChemSpider API

ChemSpider data can be accessed via RESTful API. In addition, there are tools for converting various molecular structure codes (InChI, SMILES, Mol) and for verifying the validity of InChI keys.

The API offers a set of endpoints that provide search, filters and data retrieval for compounds. 1000 queries per month are free, for more, a subscription is required. ChemSpiPy is a Python wrapper available through pypi.

Cite Them Right

Cite Them Right advises students on how to reference correctly across eight referencing styles.

What makes Cite Them Right unique is the range of referencing styles which can be accessed, including Chicago, Harvard, APA, IEEE, MLA; as well as teaching the user how to reference just about any source. This platform contains useful articles and videos which help to guide students into common queries around referencing, including how to avoid plagiarism and understanding the differences between secondary and primary sources.

CoGe

CoGe is an online system for making the retrieval and comparison of genomic information and sequence data quick and easy.

CoGe (Comparative Genomics) is a web-based platform designed for the storage, management, and analysis of genomic data. It allows researchers to compare multiple genomes across different organisms to identify evolutionary patterns, syntenic regions, chromosomal rearrangements, and gene duplications. The platform integrates tools for genome visualization, sequence alignment, and data transformation, enabling users to upload custom genomic data or access publicly available datasets. Results can be exported as interactive graphs, alignments, and genomic maps for further study and publication. Here is a typical work flow: Start with your favorite genome (mouse), do a whole genome comparison of it to human using SynMap, identify a region with an Inversion, compare the breakpoints of that region in high-detail using GEvo, extract out the human sequence using SeqView, find all the protein coding regions using FeatView, use them to find homologs in other vertebrate genomes (e.g. chimp, mouse, and platypus) using CoGeBlast, validate putative syntenic regions using GEvo and more!

Connected Papers

Connected Papers is a tool to visualize scientific literature. After entering a seed paper, it finds similar papers and creates an explorable graph. This graph is based on similarities in bibliographic patterns, but it’s not a citation graph!

All researchers and students face the risk of missing out on related literature because of the use of different vocabulary. Connected Papers may find such papers based on citation patterns.

With a click, another paper in the graph can be used as a seed paper, or alternatively, can be added as a second seed paper. Results can be exported.

Results highly depend on the graph of the chosen seed paper. When using keyword search, the ranking criteria of the hitlist are obscure.

Consensus

AI tool to search and analyze peer-reviewed literature

Consensus is an AI-powered search engine for scientific literature. Enter a research question or topic, and the tool searches more than 200 million academic documents, identifies relevant publications, and generates summaries based on the available research evidence. In addition, Consensus supports the analysis, organization, and evaluation of scientific literature while providing transparent citations to the sources used.

Corpora

All about words: word of the day, vocabulary portal for over 290 languages.

The international language corpora portal (in English) allows you to look up words in 250 different languages

CSD API

Offers for search capabilites beyond what is possible by using the web interface. Ideal for large scale projects. Accessible via Python.

CTS-lite

Chemical Translation Service Lite is a web application for interconverting chemical identifiers.

A user-friendly online application for matching chemical identifiers such as InChIs, InChIKeys, SMILES, molecular formulas, and PubChem CIDs against a subset of over 10 million compounds from PubChem. The results can be viewed directly and/or exported as CSV or JSON. As a fallback for failed SMILES queries, CTS-lite attempts to convert them to InChIKeys using RDKit. The tool can also be accessed directly via a REST API.

CYLview20

CYLview20 lets you quickly visualize and analyze molecular structures in high-quality 3D.

CYLview20 is a software tool for visualizing and analyzing molecular structures from computational chemistry. It helps users quickly generate high-quality 3D images and examine structural features such as bond lengths, angles, and transition states.

CytoScape

Cytoscape is an open-source platform for visualizing complex networks and integrating them with any type of attribute data.

Cytoscape is an open-source software platform designed for visualizing complex networks and integrating them with any type of attribute data. It is widely used in systems biology for modeling molecular interaction networks, metabolic pathways, and gene regulatory circuits. The core software provides functional modules for data integration, network layout selection, and visual customization of nodes and edges based on experimental data, such as expression profiles. Its functionality can be expanded through a plugin and app architecture to support advanced network analysis and data mining.

DataWarrior

DataWarrior is an interactive, chemistry-aware multipurpose data visualization and analysis program.

This powerful tool works with nearly any kind of tabular data. Chemical intelligence is built into the program, enabling you to handle chemical structures as easily as numerical values. It can calculate chemical properties and visualize 2D and 3D trends. Versatile graphical 2D-view are available for scatter plots, bar and pie charts, box plots, and more.

DeepL

DeepL Translate is an artificial intelligence-based machine translation service that utilizes deep learning models to convert text and documents from one language to another.

In academic and professional settings, it is used to translate research papers, abstracts, and correspondences while preserving the original contextual meaning and domain-specific terminology. The platform supports the direct upload and processing of entire files, such as Word documents, PDFs, and PowerPoint presentations, maintaining the layout and formatting of the source material. It also offers glossary functionalities, allowing users to define specific translations for technical terms to ensure consistency across documents. ETH Zurich licenses DeepL Translate Pro. Users can get a license in the ETH IT Shop.

Diagrams

A web tool for quickly drawing schemes and diagrams, e.g. flowcharts.

The vector drawing programme offers functions to draw different shapes, lines, arrows and sequences. There are templates for a wide variety of diagram types, such as organigrams, entity relations, Venn diagrams, room divisions, networks or circuit diagrams. The results can be exported as png, svg, html or xml.

DOAB Directory of Open Access Books

In this directory you can search for books that have been published Open Access and can be used freely.

You can search by keyword and filter by publisher, year or even subject.

DOAJ Directory of Open Access Journals

In this directory, you can search for a journal title and quickly find out if it is an pure open access journal.

There is also information about article processing fees (APCs) and the Creative Commons licenses used.

Doodle

Doodle is an online tool for polling and scheduling dates/times for events. This helps to reduce unneccesary email traffic. ETH Campus License.

You can create polls, for example, a list of possible dates for a meeting, and send them to everyone via a link. You can choose to receive email updates for each person who has just completed the poll. The most popular options are highlighted in real time, and the final results can be exported as an Excel file.

Doodle can be integrated with calendars from Outlook, Teams, Google, Zoom, and others. This means that new appointments added to the calendar are automatically marked as “busy” in the polls.

DuckDuckGo

DuckDuckGo is an anonymous search engine that prevents data tracking.

DuckDuckGo respects your privacy, meaning it does not log IP addresses or use identifying cookies. DuckDuckGo operates without collecting personal data, does not share personal data, and uses a secure, encrypted connection. AI features are opt-in, and there is also a DuckDuckGo browser.

Electronic Journals Library University of Regensburg

Look up even obscure journal titles and abbreviations that you find nowhere else and learn what is their publisher.

The Electronic Journals Library University of Regensburg provides a comprehensive catalogue of journals including publication history and more info. It even lists journals that have long since ceased to exist or are now published under another name.

Elsevier Researcher Academy

This online training resource offers short courses in field-independent skills such as research preparation, writing, publishing, peer-reviewing and science communication.

Learn about a broad variety of topics such as writing grant applications, research data management, manuscript preparation, writing skills, technical or book writing, scientific publishing, ethics, finding the right journal, fundamentals of peer-review, social impact of science and ensuring visibility.

EndNote

EndNote is a reference management software that enables users to create and manage bibliographic databases, as well as quickly insert citations and bibliographies while writing publications. It is available as a web-based, iPhone, and desktop application.

In EndNote, PDF full texts can be annotated and enriched with notes and keywords to make their content easier to retrieve. Endnote databases, documents, and annotations can be easily synchronized across multiple devices. EndNote supports MS Word, OpenOffice and BibTeX (via export) and offers connections to numerous bibliographic databases, such as PubMed and Web of Science, as well as library catalogues such as swisscovery.

Many valuable features are restricted in the free online version, EndNote basic. EndNote can be licensed via the ETH IT-Shop. ETH library regularly offers hands-on training sessions.

Enrichr

A comprehensive gene set enrichment analysis web server.

Software for analyzing gene sets generated by genome-wide experiments. Enrichr program contains a large collection of diverse gene set libraries available for analysis and download.

It is a comprehensive resource for curated gene sets and a search engine that collects biological knowledge including GO terms, pathways, transcriptional profiles.

If you enter gene sets from your analysis, the Enrichr program interprets it and shows the results about GO terms (biological Process, Cellular Component, Molecular Function), KEGG pathways, Genes associated with NIH grants, Transcription factors and so on. It is free, includes many accumulated genomics, transcriptomics and proteomics data and hase nice visualization of enrichment results.

Feedly

A news aggregator that collects updates from your favourite newspaper, websites, blogs, social media and RSS feeds without you needing to visit the page. For browser, Android and iOS.

Items and sources can be searched, organized, read or marked as "read later". Connections to other tools are available.

FigureLabs

FigureLabs is an AI-driven scientific illustration application designed to generate and modify figures for STEM research fields.

It incorporates features such as text-to-figure generation and sketch-to-figure conversion, transforming natural language technical prompts or hand-drawn schematics into publication-compliant diagrams. The software functions across multiple disciplines, providing tools to refine existing figures, adjust text labels, and vectorize images into SVG or editable PowerPoint formats to ensure resolution stability and integration into academic manuscripts.

Free DOI Lookup

Retrieve the DOI (Digital Object Identifier) for a given article e.g. by means of title and author name.

CrossRef is an international association of scholarly publishers that develops shared infrastructure to support more effective scholarly communications. The network covers over 60 million journal articles and other content items (books chapters, data, theses, technical reports) from thousands of scholarly and professional publishers around the globe. CrossRef currently provides a number of ways to locate a DOI: If you have bibliographic data for an item and would like to find the DOI, please use "Bibliographic metadata search". If you only have an article title and author, please use the "article title" search section of this form. If you have the text of a bibliographic reference, please use "Simple Text Query".

Gemini

Gemini is a family of multimodal AI models, capable of understanding text, code, images, audio, and video.

Google Gemini is a multimodal artificial intelligence model designed to process, analyze, and generate text, code, images, and other data types simultaneously. In research and professional settings, it functions to summarize academic literature, draft text sections, analyze technical code, and assist in data extraction from varied source documents. The system operates through natural language prompts, allowing users to cross-reference information, refine written content for clarity, and generate structured summaries of complex, multi-disciplinary datasets. ETH Zurich licenses Google Gemini with enterprise data protection. With this protection, user data is not used to train models and is not reviewed by humans. ETH Members can obtain a Google Workspace license from the ETH IT Shop.

GetAbstract

The world's largest library of book summaries. Expand your knowledge with 5-page summaries that you can read in 10 minutes or less. Main focus is business, but there is a broad selection of other books, too, e.g. auxilliary skills or classics.

Compressed Knowledge: The best of knowledge in concise summaries that include all basic facts and statements of the latest, sharpest and most relevant books. The summaries are mainly available in English and German. It's useful to get an overview, but it will never replace proper reading.

GIMP

GIMP is a free, open-source alternative (similar to Photoshop) for professional photo and image editing as well as digital touch-ups.

This cross-platform program (available for Windows, Mac, and Linux) is the ideal solution for editing, optimizing, and retouching pixel-based photos. GIMP offers an extensive range of features, ranging from simple cropping to complex photo montages with multiple layers, masks, and filters. Thanks to its active community, numerous free plugins are available to extend its capabilities, and the program supports almost all common image formats. Whether you’re quickly enhancing contrast for a presentation, cropping objects for scientific posters, or creating entirely new digital graphics - GIMP provides professional tools without monthly subscription fees, making it an indispensable tool for budget-conscious creatives and researchers.

GitLab

ETH offers free access to this version control software, which is hosted in-house.

Git is currently the most popular version control system for tracking changes and collaborative editing of source code. While Git is primarily used by software developers, it is becoming more and more popular in the scientific community as well. In fact, Git can be used to track changes to any piece of digital information. GitLab is a web-

Google Alerts

With Google Alerts you can subscribe to email updates when a new hit appears for an interesting search.

If one has created a good search query, this is carried out continuously and automatically again and again. So you can easily stay up to date.

Google Books

Google Books allows a full text search of more than 40 millions of books as well as journals/magazines.

The books are either out of copyright or have been scanned in collaboration with major libraries. With a glance, you can see where and how often your search terms appear in the book. If the book is out of copyright, or the publisher has given permission, you'll be able to see a preview of the book, and in some cases the entire text. If it's in the public domain, you are free to download a PDF copy. If you find a book you like, click on the "Buy this book" and "Borrow this book" links to see where you can buy or borrow the print book, like e.g. in the Info Center.

Google Images

Google Images is the most comprehensive search engine for image content on the web.

Very helpful is the filter for usage rights, because with it you can specifically find images that you can use freely. In addition to the keyword search, Google Image has a reversed image search. By clicking on the camera icon, an image or the URL to an image can be uploaded and a search for websites that contain this image can be performed. If this particular image cannot be found, links to similar images are displayed.

Google N-gram viewer

A web service for visualizing the occurence over time of a phrase consisting of n words (n-gram) in Google Books.

You can also specify wildcards in queries, search for inflections, perform case insensitive search, look for particular parts of speech, or add, subtract, and divide ngrams.

Google Patents

Find patents via Google.

Unlike Espacenet, Google Patents provides PDFs of patents that have been OCRed and are searchable. This is very helpful for quickly searching for information in long patents.

Google Scholar

A free search engine for the scholarly literature and case law.

To keep up with current developments, you can create alerts for search terms. Legal proceedings can be found under case law. Search for ETH Zurich under Settings/Library Links and activate ETH Get It to access articles available in print at ETH.

Google Trends

Analyze the popularity of google search queries as a function of time.

You can enter your own search terms, look at current hot trends (the top 20), check summaries from past years trends or the past week and look at geographical data associated with the searches.

Grammarly

Grammarly is an AI-powered writing assistant that reviews spelling, grammar, punctuation, clarity, and tone.

Grammarly is a cloud-based writing assistant that analyzes English text for spelling, grammar, punctuation, clarity, and tone errors. In academic and professional contexts, it identifies sentence structures that may hinder readability and offers alternative phrasing to ensure clear communication. The software can be integrated directly into web browsers, word processors, and email clients, providing real-time corrections and suggestions. It also includes features for checking plagiarism against a database of published materials and web pages.

Henry Stewart Talks

Henry Stewart Talks Ltd is a leading provider of specially prepared, animated, online, audio-visual lectures, seminar-style talks.

HSTalks publishes animated audio visual presentations by world leading experts - advanced content in a user friendly format. ETH Zurich has a subscription to the Biomedical & Life Sciences Collection.

Herdt Books

Herdt offers German manuals for a wide range of software applications.

These are available as german PDFs and are updated regularly to reflect the latest versions of the software. Apart from books on operating systems, office applications, web development and programming languages, there are also a few on auxialliary skills.

Image J

ImageJ is a freely available, Java-based image processing program for scientific image analysis.

ImageJ was developed with an open architecture that can be extended using Java plug-ins and is equipped with a macro recorder. The many plugins make it possible to solve image processing and analysis problems, from three-dimensional live-cell imaging and radiological image processing to data comparison between several imaging systems and automated hematology systems. The plugin architecture and the integrated development environment make ImageJ a popular platform for image processing.

Inkscape

Inkscape is a free, open-source alternative (similar to Illustrator) for professionally creating and editing vector graphics.

Inkscape is ideal for designing and editing vector-based graphics. It offers a vast range of features, ranging from simple shapes to complex illustrations with paths, text, and gradients. Its native file format is SVG (Scalable Vector Graphics), which guarantees lossless scaling for both the web and print. Thanks to its active community, numerous free extensions are available. Whether you’re creating diagrams and logos for a presentation, designing layouts for scientific posters, or drawing entirely new digital graphics - Inkscape provides professional tools without monthly subscription fees, making it an indispensable tool for budget-conscious creatives and researchers.

Inoreader

Inoreader is a web-based feed reader and news aggregator that assists users in collecting, organizing, and filtering digital content and news.

Inoreader lets you subscribe to and centralize RSS feeds, blogs, podcasts, newsletters, and social media channels. The tool includes features for saving articles to read later, filtering, searching, and automation rules, as well as AI-powered text summarization features (“Inoreader Intelligence”). The basic version is free to use after registration, while advanced automation features, unlimited feeds, and better third-party integrations require paid subscriptions.

IUPAC Compendium of Chemical Terminology – The Gold Book

The IUPAC Gold Book is compiled by the International Union of Pure and Applied Chemistry and is the primary source of definitions and standards in chemistry.

The compendium compiles the definitions of terms described in the various IUPAC glossaries and other IUPAC nomenclature documents. In recognition of the contribution of Victor Gold, initiator of the first edition, the compendium is also referred to as the „Gold Book“.

Journal Checker Tool

The Journal Checker Tool by cOAlition S support you in finding Plan S compliant “routes” through which to publish your articles.

Enter the name of your funder, institution and the journal to which you plan to submit an article, and the tool checks if this combination of funder, institution and journal offers any route to compliance with Plan S.

The current criteria for compliance center on whether a particular journal enables a researcher to publish an article under a CC BY licence without embargo, and retain sufficient copyright to enable compliance with open access policies.

Journal finder (Elsevier)

Find the perfect Journal (from Elsevier portfolio only) for your manuscript.

Enter title and abstract and the almighty algorithm will find the perfect spot for your opus magnum. The list of suggested journals includes typical timeline for refereeing, rejection rate, some impact metrics, open access fees and the expected embargo period.

Jove

JoVE (Journal of Visualized Experiments) is a peer-reviewed scientific journal that publishes experimental methods and research protocols in a video-based format.

Jove serves to address the challenges of reproducibility in scientific research by providing detailed, step-by-step video demonstrations of laboratory techniques alongside traditional written manuscripts. The platform covers disciplines across biology, chemistry, medicine, engineering, and environmental sciences. In addition to research articles, it provides educational video modules designed for undergraduate and graduate-level science instruction.

KNIME

A free and open-source data analytics, reporting and integration platform.

KNIME can collect different types of data via import or webscraping. These can be processed in various ways and finally visualized or exported. A reusable workflow can be quickly created by drag-and-drop and linking so-called nodes (processing unit). To implement more complex applications, it is possible to integrate Python, R or Wekascripts. For chemical applications there is integration with JChem/Marvin and Schrödinger, which requires buying a separate licence.

Kudos

Kudos is a web-based service that helps authors enrich, explain, and share their publications to increase their visibility, readership, and research impact.

Authors can describe their research in plain language, add supplementary information, and then communicate it via social media channels or email. The effect of these actions can be measured via a wide range of metrics.

The Kudos dashboard provides statistics about downloads, citation count, Altmetric score, and many more metrics. It is also an overview of the articles including the additional context and resources that were added by the user.

LeapSpace

AI tool to search and analyze peer-reviewed literature

LeapSpace ist eine KI-gestützte Forschungsplattform von Elsevier. Forschende können eine Forschungsfrage oder ein Thema eingeben, und LeapSpace durchsucht eine umfangreiche, kuratierte Sammlung wissenschaftlicher Literatur, einschliesslich in Scopus indexierter Inhalte sowie begutachteter Volltextpublikationen. Die Plattform unterstützt Nutzerinnen und Nutzer dabei, relevante Forschung zu identifizieren, wissenschaftliche Evidenz zu synthetisieren, Aussagen kritisch zu bewerten sowie geeignete Autorinnen und Autoren und Fördermöglichkeiten zu finden. LeapSpace legt besonderen Wert auf Transparenz, indem nachvollziehbare Quellenangaben und Vertrauensindikatoren bereitgestellt werden, die es Forschenden ermöglichen, die den Antworten zugrunde liegende Evidenz zu überprüfen.

LEO

Online dictionaries for 10 languages.

Online dictionaries German-English, -French, -Spanish-, -Italian, -Chinese,- Russian, -Portuguese and -Polish, as well as English-Spanish, -French and -Russian and finally Spanish-Portugues. There is a forum to discuss translations.

LibKey Nomad

LibKey Nomad is a browser plugin that generates direct links to the PDF of papers in various databases and search engines.

Currently, direct links are implemented in Scopus, Web of Science, PubMed, Embase and Wikipedia. Select your own institution when installing, and, if no online access is available, but a print edition is, then you will be taken directly to the corresponding page in Swisscovery.

Nomad saves you a few clicks and reduces loading times, especially when regularly browsing and skimming through the latest magazine issues. The downside is that navigating to supporting materials is a bit more tedious.

Linguee

Dictionary and search in 100 million translations.

Linguee is a unique combination of an editorial dictionary and a search engine. The search results are divided into two parts in Linguee. First, you see clearly structured results from the reliably edited dictionary. This gives you a quick overview of the translation options. Moreover, there are set examples from other sources that give you an impression of how your keyword is translated in context.

LinkedIn

With more than 750 millions registered users, LinkedIn is the largest business-oriented social networking service to maintain your contacts, find new business contacts or search for a job.

When you join LinkedIn, you can showcase your work and yourself to get spotted by employers or headhunters, stay in touch with (former) colleagues and business partners, find professionals with certain qualifications, get access to people, jobs, news, updates, and insights based on your network.

Note: Carefully adjust settings to avoid sending or getting unneccessary notifications (spam mail).

LinkedIn Learning

Repository of high quality online courses, e. g. for image processing (Photoshop, Illustrator, etc.), coding, visualizing and more. ETH employees can license LinkedIn Learning via ETH IT-Shop.

LinkedIn Learning offers courses ranging from 1 to more than 10 hours. Available fields are 3D animation, music, business, CAD, design, programming, AI, education, marketing, photography, video and web development. You can further search by keywords, topics, software name and desired career.

Mamba

Mamba helps to manage and run different versions of programming languages (Python, R and many more) on the same computer and to create the necessary environment to run older packages with different dependencies.

The free, open-source distribution let's you run different development enviroments (JupyterLab, JupyerNotebook, PyCharm, Spyder, RStudio und VS Code) with exact control of the language and package version. Ideal for scientific computing (data science, machine learning applications, large-scale data processing, predictive analytics, etc.). Anaconda is fast and compact.

Manchester Academic Phrasebank

The freely available database with hundreds of sentence templates that are typically used in academic writing.

The database is based on a corpus of some hundred postgraduate dissertations completed at the University of Manchester and has been further expanded by analysing academic articles from a range of disciplines. As the items in the database are mostly generic in nature using them does not constitute plagiarism. Sentence templates for different sections of academic research articles (Introduction, Results, Discussion, Conclusions) are available as well as templates for various language functions such as expressing criticism, explaing causality, describing trends, etc. The Manchester Academic Phrasebank was created by Dr. John Morley, the director of the university-wide Language Programmes at The University of Manchester.

MapMen

Annotate a plant genome, visualize high-throughput data in a biological context and compare multiple experiments.

MapMan is a software tool that supports the visualization of data sets in the context of existing knowledge.

Mendeley

Mendely is a freely available reference management software package, used to create/manage literature databases and quickly adding references and bibliographies when writing theses and publications. Available as web-based and desktop version. We recommend that you use the open-source product Zotero instead of Mendeley.

In Mendely you can process your collected pdfs with highlighter, sticky notes and comments, and tagging with keywords can help to retrieve your information at a later point. Mendely databases, attached files and annotations can be synchronized across many devices and with other people. Supports MS Word, LibreOffice and BibTeX (via export).

Mendeley also tries to suggest potentially interesting literature based on your library via algorithm.

The Mendeley Institutional Edition which has been licensed by the ETH Bibliothek is a premium version of Mendeley in which the core Mendeley capabilities are enhanced (sharing libraries) and more cloud space is available (100 GB). ETH library regularly offers hands-on training sessions.

Mercury

Crystal structure visualization, exploration and analysis tool.

It enables you to

  • generate packing diagrams.
  • define and visualise Miller planes.
  • build and explore networks of intermolecular contacts.
  • display space-group symmetry elements.
  • calculate and display voids.
  • generate publication-quality images.

Mind the Graph

Mind the Graph is an easy-to-use online platform that helps researchers design scientifically accurate infographics, graphical abstracts, and conference posters.

Mind the Graph is an online infographic maker designed to assist researchers in creating graphical abstracts, presentation slides, and scientific posters. It features a digital repository of biological, medical, and chemical illustrations categorized by scientific discipline. Users can select templates, combine illustrations with custom charts, and adjust design properties such as color and layout to communicate research findings. The platform provides export options that comply with the format and resolution criteria of international peer-reviewed journals.

Mnova

MestReNova is a user-friendly software for the processing, analysis, simulation and presentation of NMR and LC/GC/MS data.

With Mnova you can

  • Handle NMR data from common manufacturers (Agilent, Bruker, JEOL, PicoSpin, Magritek, Nanalysis, Oxford Instruments, and more).
  • Perform analysis of spectra (deconvolution, peak picking, integration, multiplet analysis, etc.).
  • Process your data automatically (1H, 13C, DEPTs or any other 1D NMR as well as any 2D NMR correlations, such as HSQC, HMBC, NOESY, COSY, TOCSY, etc.).
  • Build high quality, publication-ready spectra whilst working up the data.

MNova is available from the ETH IT-Shop.

Mol* Viewer

Web tool for the processing/visualization of 3D molecule structures.

Fast web application for 3D visualization of molecules and other related data. It provides standard visualizations of molecules (cartoons, surfaces, ball and stick, etc.), assemblies, symmetry partner, electron density and cryoEM maps. By an integrated PDBe API you can view and explore validation and annotation data. You can directly load molecules into the viewer by just entering the pdb code. Parts of the molecules can be selected by a powerful python-based selection syntax.

MS Copilot

MS Copilot is a chatbot assistant by Microsoft that supports users with text generation, data analysis, image creation, and programming.

This cross-platform application is based on large language models. It is designed for the automated processing and generation of text, answering queries, and writing source code. Additionally, the tool includes features for AI-based image generation. Copilot can be used as a standalone web service or integrated into Microsoft 365 applications. The basic version is free to use after registration, while advanced features and deeper integrations with EndNote can be licensed through a Microsoft Cloud subscription in the ETH IT Shop.

NMRium

NMRium is a browser-based software program for processing, analyzing, simulating, and presenting NMR data.

NMRium supports multiple file formats, including JCAMP-DX, Bruker folder, and 1D spectra of JEOL and Varian. It processes both 1D and 2D spectra, features smart peak picking and allows to assign signals to molecule structures. Superimposition of spectra is possible and the results can be exported as SVG or PNG files.

NotebookLM

NotebookLM is an AI-powered research assistant that turns user-provided documents into summaries, source-grounded answers, and audio or video overviews.

NotebookLM is an AI-powered note-taking and research assistant application developed by Google. It allows users to upload source documents, such as research PDFs, notes, transcripts, and articles, into a localized notebook workspace. The system uses these specific sources as a grounding database to answer queries, generate summaries, extract key citations, and outline concepts without drawing from broader, external internet data. This facilitates targeted synthesis and review of specific literature collections or project files. ETH Zurich licenses NotebookLM with enterprise data protection. With this protection, user data is not used to train models and is not reviewed by humans. ETH Members can obtain a Google Workspace license from the ETH IT Shop.

Notion

Is a highly customizable note-taking, project management, collaboration and planning software. Not suitable for offline-work.

You can organise and connect notes, databases, kanban boards, wikis, calendars and reminders. It is also possible to collaborate with other people. Free academic version with your ETH email address.

Obsidian

Obsidian is primarily an app for managing and structuring notes and texts, but also allows other file types.

Text data are stored as easily re-exportable markdown files. For retrieval there's text search, tags, links between notes or a visualization as a network. There is a large community that actively develops extensions. Automation of processes, templates, aggregation of data. The possibilities are endless.

Open Policy Finder

Uploading the submitted or accepted version of a scientific article to a repository is the green way to meet the criteria of Open Access. But how long do you have to wait before you are allowed to do so?

Open Policy Finder quickly and clearly summarizes which embargo periods apply to which version of the manuscript, as well as which Creative Commons licenses are used. In case of Open Access obligation by the funder, the embargo period may also be shorter than usual.

OpenBIS

openBIS is an Open Source Biology Information System, developed and maintained by the Scientific IT Services (SIS) group at ETH.

openBIS can also be used as an electronic laboratory journal as well as an inventory in various biological contexts, when chemical structure handling is not required. The openBIS software framework can be easily adapted to the following technologies: High content screening, proteomics, metabolomics and deep sequencing. Within ETH, the system enables easy long-term archiving of research data. Direct connections to cloud computing are possible.

ORCID

Open Researcher and Contributor ID (ORCID) assigns researchers a unique identification number (like a doggy tag or social security number). This is important to uniquely identify researchers with common names (e.g. John Smith or Zhāng Wěi) and to distinguish them from individuals of the same name. It ensures that older publications can even be found if a researcher is currently working at a new institution.

ORCID can be used when submitting new manuscripts, so that your ORCID publication list will be automatically updated. You can import earlier publications via Crossref or Scopus and it is possible to create a detailed profile in ORCID.

Origin

Advanced scientific graphing and data analysis software.

With over 100 built-in 2D and 3D graph types their point-and-click customization Origin makes it easy to create publication-quality figures. Origin allows the user to automatically update data and parameters, create templates for repetitive tasks, perform batch operations, connect with other programs (MATLAB, LabVIEW, Microsoft Excel) or create custom routines using scripting and C languages, embedded Python, or the R console. Origin also provides various tools for linear, polynomial and nonlinear curve and surface fitting. Additionally it is very helpful in peak analysis, signal processing and spectra fitting. Origin is available from the ETH IT-Shop.

Overleaf

Overleaf is a web service for collaborative work on LaTeX documents. Free of charge via nethz-login.

In Overleaf several authors can work on the same document at the same time and all of them see the latest version. Comments can be added and changes can be tracked. Other valuable functions are the real-time preview and LaTeX error tracking. Integration of Dropbox, Github, Zotero & Mendeley is possible.

Paperpile (with GoogleDocs)

Google's literature management tool is based on Chrome and helps creating/managing literature databaseserences and quick adding of references and bibliographies when writing theses and publications in Google Office. Billed monthly (around EUR 4.-).

In Paperpile you can process your collected pdfs with Highlighter and Notes, and tagging with keywords can help to retrieve your information at a later point. A remarkable feature are summaries, which facilitate working with ideas, corresponding text snippets and their references. Databases, attached files and annotations can be synchronized across many devices.

Papers

ReadCube Papers is a reference management software package, used to create/manage literature databases and to quickly add references and bibliographies when writing theses and publications. Available in an annual subscription model (USD 39 or 78) as web-based, mobile or desktop version.

In Papers you can process your collected pdfs with Highlighter and Notes, and tagging with keywords can help to retrieve your information at a later point. Pdfs cannot only be processed in the app, but also in the web application. Papers databases, attached files and annotations can be synchronized across many devices and with other people, with unlimited storage space in the cloud. An AI assistant allows to chat with publications. The citation tool SmartCite supports MS Word and Google Docs. The Papers browser extension can connect to databases such as PubMed, Google Scholar and Dimensions.

Perplexity

Perplexity is an AI-powered conversational search engine and research assistant that utilizes large language models to answer user queries.

The platform includes inline citations and links directly to source materials, ensuring transparency and facilitating verification.

Phylogeny Analysis

Phylogeny.fr is a free, simple to use web service dedicated to reconstructing and analysing phylogenetic relationships between molecular sequences.

Methods that perform well in benchmarking tests are used to build the multiple sequence alignment and tree.

PROSS

PROSS (Protein Repair One-Stop Shop) is a database-based algorithm for the prediction of stabilizing mutations for unstable proteins and is free to academic users.

Starting point of the process is a pdb-file of the protein. Thereof, a multiple sequence alignment is conducted whereby different parameters can be set, e.g. residues crucial for ligand binding or protein-protein interaction considered not being changeable or reducing the multiple sequence alignment to specific taxa. Resulting design suggestions containing different predicted substitutions are subsequently scored in regard of Rosetta scoring functions. For each design fasta and pdb output files are generated. In addition the used multiple sequence alignment and the resulting scoring file are provided for download.

PubPeer

PubPeer enables scientist to search for their publications or their peers publications and provide feedback and/or start a conversation anonymously.

Articles can be searched by DOI, PMID, arXiv ID, keyword or author. PubPeer has also contributed in revealing many cases of scientific misconduct.

PyMOL

Software for 3D visualization and analysis of biomolecules.

PyMOL is an open-source, molecular visualization system working with all data formats in structural biology (PDB etc). PyMOL can produce high-quality 3D images of small molecules and biological macromolecules, such as proteins. Students can obtain a licence freen of charge.

QEDScience

QED Science ist eine Plattform auf Basis künstlicher Intelligenz, die entwickelt wurde, um die strukturelle Logik, Originalität und Validität wissenschaftlicher Manuskripte, insbesondere Preprints aus den Lebenswissenschaften, zu bewerten und zu überprüfen.

It works by decomposing a research paper or grant proposal into a localized "claim tree," mapping out individual assertions and their corresponding evidence to identify logical gaps or unsupported conclusions. The system calculates a standardized "QED Score" to grade scientific quality through blinded evaluations, removing variables such as author identity, institutional prestige, and publication venue. Additionally, the software features integration with preprint servers like bioRxiv to provide automated, peer-review-level feedback, text amendments, and alternative experimental suggestions directly to researchers before formal publication. ETH Zurich suggests not to put unpublished data in AI systems without data protection (such as QED Science). Use this tool at the preprint stage, when the data is public, is recommended.

Quarto

Quarto is an open-source scientific and technical publishing system built on Pandoc

Quarto allows you to combine create Markdown text or Jupyter notebooks with embedded code snippets of Python, Julia, R or Observable with the resulting output, be it numeric or graphic. It can be used to create reports, presentations, dashboards, websites, blogs and books. Output in HTML, PDF, MS Word, ePub.

Qwant

An alternative to Google that is a bit more respectful of your data privacy.

Qwant won't track you and won't create user profiles. There are ads, but no ad cookies and trackers. You can even open your search results without being tracked by the sites you visit.

R

R is an open-source script-based programming language for which extensive additional packages for various special applications and fields are available.

R offers a variety of options for importing, wrangling, processing and visualizing different types of data. ALL possible types of statistics can be easily executed. RStudio is the recommended standard graphical user interface. Since R is only one letter, using the CRAN acronym helps googling problems with the software.

ReactionFlash

Learn Named Reactions, understand mechanisms, look at examples from Reaxys and test your knowledge with ReactionFlash for Android and portable Apple devices.

In organic chemistry, reactions – usually named after their discoverers – are a fundamental part of every chemist's toolkit. ReactionFlash helps you learn and understand named reactions: from the basic one, over the famous ones, to the very obscure one. Not only does the app give you the reaction, it also shows you mechanism, published examples from Reaxys, and even allows you to test your skills with the ReactionFlash Quiz.

Reaxys API

The Chemistry | Biology | Pharmacy Information Centre has licensed access to the Reaxys API, which allows Reaxys data to be obtained in structured form.

Via API you can query and access the following type of data: Structures, reactions, physical and chemical data points as well as literature.

 

The API can be accessed using Python or KNIME.

ResearchGate

ResearchGate is the largest academic social networking site and researchers to share papers, ask and answer questions, and find collaborators.

Users can upload research information (papers, data, chapters, negative results, patents, research proposals, methods, presentations, and software code). Users may also follow the activities of other users and engage in discussions with them. There is a function to directly ask for author versions of articles. RG shows also the h-index of a scientist, in addition to the proprietary RG score, which depends on the activity in the network.

Note: Carefully adjust settings to avoid sending or getting unnecessary notifications (spam mail).

ResearchRabbit

ResearchRabbit sees itself as a "Spotify for papers" and supports researchers in finding and organizing literature.

In ResearchRabbit, articles relevant to a specific topic can be added, for example by entering the DOIs or by linking ResearchRabbit with Zotero. ResearchRabbit then evaluates the bibliographic relationships (references and citations, similar keywords) between these and other articles and suggests further relevant papers. Alerts on newly published relevant articles can also be sent. For each collection of papers, network visualizations can be generated that are very similar to those of VOSviewer.

Resolve a DOI name

Get to the article with a known DOI.

The International DOI Foundation (IDF) manages the DOI (Digital Object Identifier) system and also provides retrieval tools. Type or paste a DOI number into the text box and click Go. Your browser will take you to the Web page (URL) associated with that DOI.

Retraction Watch

Since 2010, this blog has provided background information on retracted articles.

If you find anything suspicious in a paper you can contact the Reatraction Watch team and they might investigate. There is also a searchable database of retracted articles.

SciSummary

SciSummary uses LLMs and other open source models to summarize research papers.

SciSummary focuses on the evaluation of individual research articles. The content of the article is evaluated and summarized by the large language model, after which questions about the content can be asked via a chat. Existing illustrations are integrated into the summary, and the articles are also keyworded.

Scite

scite is an online platform designed to evaluate the veracity of scientific publications through Smart Citations.

Unlike traditional citation indexes, it uses machine learning algorithms to extract and analyze the citation context from academic literature, categorizing how a paper has been cited by subsequent studies. The platform classifies citations into categories indicating whether they provide supporting evidence, contrasting evidence, or simply mention the target research. This metadata assists researchers and evaluators in assessing the consensus around specific scientific claims and identifying the reliability of published findings.

Scopus API

ETH Zurich has also licensed the Scopus APIs, which allow Scopus data to be obtained in structured form.

There are distinct search APIs for Scopus, authors and affiliation; there are retrieval APIs for abstract, affiliation and author; there are metadata APIs for citation overviews, citation counts, PlumX metrics, journal search, journal details and finally there is an API for subject classification. The Python package pybliometrics provides an efficient toolbox for working with the Scopus APIs.

Scribus

Scribus is a free, open-source program for the professional design and layout of print media and digital documents. The open-source software is completely free of charge and available across platforms for Windows, macOS, and Linux.

With Scribus, you can precisely lay out flyers, brochures, magazines, and books using a flexible page layout system. In addition to versatile tools for typography, color management (CMYK and spot colors), and vector graphics, the program focuses primarily on professional print preparation. The program supports exporting to print-ready PDF/X formats as well as interactive PDFs and offers a wide range of import options for graphics and text files

SnapGene

SnapGene is software used to plan, visualize, and document molecular cloning and DNA manipulation procedures.

SnapGene is a molecular biology software tool used for planning, visualizing, and documenting molecular cloning and genetic engineering procedures. It enables the digital mapping of DNA and RNA sequences, plasmid maps, and gene annotations. The program simulates molecular cloning techniques, including PCR, restriction cloning, Gibson Assembly, and site-directed mutagenesis, allowing researchers to predict experimental outcomes prior to laboratory execution. It automatically tracks manipulation histories to maintain documentation of sequence origins and modifications.

Startpage

Startpage is a powerful search engine employing the most advanced metasearch technology without collecting or sharing any personal information. Start using this search enginge to avoid data tracking and biased retrieval caused by the filter bubble.

You get the results from other search engines, but without leaving any traces. Neither are IP addresses stored, nor is personal data gathered or passed on to third parties, and no identifying cookies are placed on your browser.

Statista

Are you looking for statistics to support your claim? The Statista platform provides facts and figures for students and researchers.

Statista provides statistical data and contains over 1 million data sets concerning a broad range of topics and from more than 50,000 sources. Industry and company information with key figures, trend analyses and forecasts, historical and current facts - the database bundles information for your basic research.

The data sets are prepared according to scientific criteria and for each statistic the available metadata such as source, publication date, number of respondents, etc. are published. Thus, the information on Statista is verifiable and can be used for your research in a scientifically secured way.

STRING

STRING provides functional protein association networks from information about physical and functional interactions between proteins.

Data from various sources are aggregated using an easy to use web-based interface. After entering a protein name/sequence, a network of different types of interactions (color-coded) is displayed: experimentally verified, based on the genetic context (neighborhood, fusions, co-occurrence), derived from textmining, due to co-expression or based on protein homology.

The network can be recentered on other proteisn, and further information can be displayed for each individual protein (gene names, protein domains, 3D structures, etc.). Links to further databases are provided (e.g. NCBI, KEGG, UniProt, PDB). There are different viewing functionalities across species like neighborhood (adjacent genes of similar proteins) or fusion (identify fusion proteins). The data can be exported in various formats and an API for developers is available. It is even possible to download the raw data that is used by STRING to generate the network; they are provided under a Creative Commons license.

SWITCH-edu ID

Edu-ID is an online identity that enables access to services in the whole of Switzerland.

Within ETH, edu-ID allows you to order books or copies of articles via Swisscovery or rent a locker at the information center. Don't forget to link your ID to you ETH-Profile, otherwise there might be fees when ordering books from e.g. Zentralbibliothek Zürich (ZB). Edu-ID can also be used to access Swiss MOOC, Nationallizenzen, some Moodle or OLAT courses or services such as SWITCHdrive.

Synthia

Tool for computer-assisted retrosynthesis planning

SYNTHIA is a computer-aided retrosynthetic planning tool for synthetic chemistry. Enter a target molecule as a chemical structure or SMILES string, and the software generates and evaluates multiple synthetic routes based on expert-coded reaction rules and commercially available starting materials. In addition, SYNTHIA supports the visualization, comparison, customization, and export of synthesis pathways to help researchers identify efficient and innovative routes to target compounds. [Infozine_31_EN | PDF]

t1p short links

Free short link service.

There is no data collection and additionally the links are checked for malware.

Trello

Trello is a visual project management tool that facilitates team collaboration and self-organization through flexible Kanban boards.

Trello uses digital lists and cards to neatly structure tasks, projects, and workflows. You can set deadlines, create checklists, attach documents, and assign team members, which greatly simplifies progress tracking. With automation features and integration with third-party tools (such as Google Drive or Slack), Trello can be flexibly incorporated into workflows: organizing research projects, planning publication deadlines as a team, or structuring your daily academic routine - the applications are numerous.

u.ethz.ch short links

Short link service only for ETH URLs.

To view user numbers, just add a plus sign to the short link. For links outside ETH Zurich, we recommend t1p.

Unit Conversion

Online unit converter.

A free online conversion tool to easily convert between different units of measurement in more than 70 categories. The Unit Conversion Tool software is also available for download (USD 30.-).

Unpaywall

Unpaywall is a browser extension that searches for freely available versions (green Open Access) of scientific articles to which there is no access through the institution.

The plugin is available for Firefox and Chrome and after installation a green or gray padlock appears when you visit the web page of a journal article. Clicking on the green version returns the freely available version of the article, whereas gray means that, unfortunately, no free version was found.

VMD-Visual Molecular Dynamics

Software for 3D visualization, animation and analysis of molecules.

VMD is designed for modeling, visualization, and analysis of biological systems but it may also be used to view molecules in general, as it can read various coordinate files to display the contained structure. VMD provides a wide variety of methods for rendering and coloring molecules. Molecular scenes can be saved in various formats or exported to external rendering tools such as POV-Ray, Tachyon and others.

VOSViewer

VOSviewer is a free software tool for constructing and visualizing bibliometric networks.

These networks may for instance include journals, researchers, or individual publications, and they can be constructed based on citation, bibliographic coupling, co-citation, or co-authorship relations. VOSviewer also offers text mining functionality that can be used to construct and visualize co-occurrence networks of important terms extracted from a body of scientific literature. Data from Web of Science, Scopus, Dimensions, Lens, PubMed, Crossref, Europe PMC, OpenAlex, Semantic Scholar, OpenCitations, and WikiData are natively supported.

WolframAlpha

WolframAlpha introduces a fundamentally new way to get knowledge and answers – not by searching the web, but by doing dynamic computations based on a vast collection of built-in data, algorithms, and methods.

WolframAlpha is based on the software Mathematica. The search engine works particularly well for content from exact sciences and is available also as an app. Here you can solve integrals or equations, convert units or calculate various things.

Wordclouds

User-friendly tool for creation of word clouds from text.

Words or word groups that occur more frequently in the text are displayed proportionally larger. If certain words are overrepresented, they can also be scaled using the logarithm or square root of the numbers. Clouds can be designed with different fonts, layouts and color schemes. The images can be saved as svg, png or JSON.

Wordpress Blogs

With Wordpress a blog can be created in no time and with little effort. Blogs can be public or restrict access to people with a login.

The blogs can be used for various purposes: As a themed blog for an interested audience, as a forum for the discussion of current literature, as a platform for the exchange of like-minded people, as an archive of read articles, travel or photo diaries, etc... Each ETH member can run up to 5 blogs free of charge.

Zotero

Zotero is a reference management software package, used to create/manage literature databases and quickly adding references and bibliographies when writing theses and publications. Available as web-based, iPhone or desktop version.

In Zotero you can process your collected pdfs with Highlighter and Notes, and tagging with keywords can help to retrieve your information at a later point. Pdfs cannot only be processed in the app, but also in the web application. Papers databases, attached files and annotations can be synchronized across many devices and with other people. Supports MS Word, LibreOffice and BibTeX (via export). Can connect to databases like PubMed, Google Scholar, Dimensions, Crossref, arXiv. For ETH members, there's unlimited storage space.